Molecule Type | heteromolecule |
Residue Name (RNME) | VM2S |
Formula | C88H170N8O9 |
IUPAC InChI Key | YSMHESXLZHNYRX-PIIAZFBGSA-N |
IUPAC InChI | InChI=1S/C88H170N8O9/c1-13-25-33-37-41-45-49-53-61-89-65-81(97)90(62-54-50-46-42-38-34-26-14-2)70-82(98)91(63-55-51-47-43-39-35-27-15-3)71-83(99)92(64-56-52-48-44-40-36-28-16-4)72-84(100)93(66-77(21-9)57-29-17-5)73-85(101)94(67-78(22-10)58-30-18-6)74-86(102)95(68-79(23-11)59-31-19-7)75-87(103)96(76-88(104)105)69-80(24-12)60-32-20-8/h77-80,89H,13-76H2,1-12H3,(H,104,105)/t77-,78-,79-,80-/m0/s1 |
IUPAC Name | |
Common Name | |
Canonical SMILES (Daylight) | CCCCCCCCCCN(C(=O)CN(C(=O)CN(C(=O)CNCCCCCCCCCC)CCCCCCCCCC)CCCCCCCCCC)CC(=O)N(CC(=O)N(CC(=O)N(CC(=O)N(CC(=O)O)C[C@H](CCCC)CC)C[C@H](CCCC)CC)C[C@H](CCCC)CC)C[C@H](CCCC)CC |
Number of atoms | 275 |
Net Charge | 0 |
Forcefield | multiple |
Molecule ID | 19652 |
Visibility | Public |
Molecule Tags |
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Processing Stage | Template | Semi-Empirical QM (QM0) | DFT QM (QM1) | DFT Hessian QM (QM2) | |
---|---|---|---|---|---|
Calculation | None | Energy Minization | Energy Minization | Hessian | |
Level of Theory | None | Semi-Empirical / SCF | DFT (B3LYP/6-31G*) | DFT (B3LYP/6-31G*) | |
Default Size Limit (Atoms) | 2000 | 500 | 50 | 40 | |
Content of MD Topology | |||||
Charges Derived From | None | MOPAC | Merz-Singh-Kollman | Merz-Singh-Kollman | |
Geometry | User Provided | Optimized | Optimized | Optimized | |
Non-Bonded Interactions | Bonds | Rule Based: Parameters are asigned from existing parameters with a set of rules based on atom types and geometry. | Hessian Based: Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists. | ||
Angles | |||||
Dihedrals |
Current Processing State | Completed |
Total Processing Time | 3:09:04 (hh:mm:ss) |
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