C65H103N14O24S | MD Topology | NMR | X-Ray

Visualize with JSmol

Molecule Information

Molecule Typeheteromolecule
Residue Name (RNME)M1E2
FormulaC65H103N14O24S
IUPAC InChI Key
LIDCYMYNOSPVFJ-VSUOEFAVSA-N
IUPAC InChI
InChI=1S/C65H104N14O24S/c1-32(2)28-43(59(96)71-39(18-22-51(87)88)56(93)77-46(31-48(68)82)64(101)79-26-9-11-47(79)62(99)73-42(65(102)103)10-7-8-25-66)74-61(98)45(30-35-12-14-36(81)15-13-35)75-55(92)38(17-21-50(85)86)70-57(94)41(24-27-104-6)72-60(97)44(29-33(3)4)76-63(100)53(34(5)80)78-58(95)40(19-23-52(89)90)69-54(91)37(67)16-20-49(83)84/h12-15,32-34,37-47,53,80-81H,7-11,16-31H2,1-6,66-67H3,(H2,68,82)(H,69,91)(H,70,94)(H,71,96)(H,72,97)(H,73,99)(H,74,98)(H,75,92)(H,76,100)(H,77,93)(H,78,95)(H,83,84)(H,85,86)(H,87,88)(H,89,90)(H,102,103)/t34-,37+,38+,39+,40+,41+,42+,43+,44+,45+,46+,47+,53+/m1/s1
IUPAC Name
Common Name
Canonical SMILES (Daylight)
[NH3+]CCCC[C@@H](C(=O)[O-])NC(=O)[C@@H]1CCCN1C(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@H]([C@H](O)C)NC(=O)[C@@H](NC(=O)[C@H](CCC(=O)O)[NH3+])CCC(=O)O)CC(C)C)CCSC)CCC(=O)O)Cc1ccc(cc1)O)CC(C)C)CCC(=O)O)CC(=O)N
Number of atoms207
Net Charge1
Forcefieldmultiple
Molecule ID249523
Visibility Public
Molecule Tags

Format

Molecular Dynamics (MD) Files

Generating ...

X-Ray - Docking Files

Generating ...

NMR Parameters

1H NMR Spectrum

Generating ...

Fragment-Based Charges

No charge assignments available. Use the button above to use OFraMP fragment-based charge assignment.

Topology History

Processing Information

QM Processing Stage

Click table to toggle details.

Processing Stage Template Semi-Empirical QM (QM0) DFT QM (QM1) DFT Hessian QM (QM2)
Calculation None Energy Minization Energy Minization Hessian
Level of Theory None Semi-Empirical / SCF DFT (B3LYP/6-31G*) DFT (B3LYP/6-31G*)
Default Size Limit (Atoms) 2000 500 50 40
Content of MD Topology
Charges Derived From None MOPAC Merz-Singh-Kollman Merz-Singh-Kollman
Geometry  User Provided Optimized Optimized Optimized
Non-Bonded Interactions Bonds Rule Based:

Parameters are asigned from existing parameters with a set of rules based on atom types and geometry.

Hessian Based:

Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists.

Angles
Dihedrals

Data

Current Processing StateCompleted
Total Processing Time2:10:23 (hh:mm:ss)

ATB Pipeline Setting

Access to this feature is currently restricted

The maximum QM level is computed using the ATB Pipeline atom limits but can be manually increased on a case by case basis.

Calculated Solvation Free Energy

Access to this feature is currently restricted

Submit New Solvation Free Energy Computation