Molecule Type | sugar |
Residue Name (RNME) | OMD5 |
Formula | C13H20NO8 |
IUPAC InChI Key | JVNNROMVCVMFNI-NSQYCNMKSA-N |
IUPAC InChI | InChI=1S/C13H21NO8/c1-3-21-8-4-9(13(19)20)22-12(10(8)14-6(2)16)11(18)7(17)5-15/h4,7-8,10-12,15,17-18H,3,5H2,1-2H3,(H,14,16)(H,19,20)/t7-,8+,10-,11-,12-/m1/s1 |
IUPAC Name | |
Common Name | 5-(acetylamino)-2,6-anhydro-3,5-dideoxy-4-O-ethyl-D-glycero-D-galacto-non-2-enonicacid |
Canonical SMILES (Daylight) | CCO[C@H]1C=C(O[C@H]([C@@H]1NC(=O)C)[C@@H]([C@@H](CO)O)O)C(=O)[O-] |
Number of atoms | 42 |
Net Charge | -1 |
Forcefield | multiple |
Molecule ID | 302644 |
ChemSpider ID | 20557799 |
Visibility | Public |
Molecule Tags |
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Processing Stage | Template | Semi-Empirical QM (QM0) | DFT QM (QM1) | DFT Hessian QM (QM2) | |
---|---|---|---|---|---|
Calculation | None | Energy Minization | Energy Minization | Hessian | |
Level of Theory | None | Semi-Empirical / SCF | DFT (B3LYP/6-31G*) | DFT (B3LYP/6-31G*) | |
Default Size Limit (Atoms) | 2000 | 500 | 50 | 40 | |
Content of MD Topology | |||||
Charges Derived From | None | MOPAC | Merz-Singh-Kollman | Merz-Singh-Kollman | |
Geometry | User Provided | Optimized | Optimized | Optimized | |
Non-Bonded Interactions | Bonds | Rule Based: Parameters are asigned from existing parameters with a set of rules based on atom types and geometry. | Hessian Based: Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists. | ||
Angles | |||||
Dihedrals |
Current Processing State | Completed |
Total Processing Time | 11:56:11 (hh:mm:ss) |
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