Molecule Type | sugar |
Residue Name (RNME) | X2HF |
Formula | C15H24NO6 |
IUPAC InChI Key | PPNBAHKUIWGUHN-NJZAAPMLSA-N |
IUPAC InChI | InChI=1S/C15H25NO6/c1-5-10(6-2)21-15-13(16-9(4)17)11(20-7-3)8-12(22-15)14(18)19/h8,10-11,13,15H,5-7H2,1-4H3,(H,16,17)(H,18,19)/t11-,13+,15+/m0/s1 |
IUPAC Name | |
Common Name | 3-Pentanyl2-acetamido-2,4-dideoxy-3-O-ethyl-alpha-L-threo-hex-4-enopyranosiduronicacid |
Canonical SMILES (Daylight) | CCO[C@H]1C=C(O[C@H]([C@@H]1NC(=O)C)OC(CC)CC)C(=[O-])O |
Number of atoms | 46 |
Net Charge | -1 |
Forcefield | multiple |
Molecule ID | 302758 |
ChemSpider ID | 28642636 |
Visibility | Public |
Molecule Tags |
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Processing Stage | Template | Semi-Empirical QM (QM0) | DFT QM (QM1) | DFT Hessian QM (QM2) | |
---|---|---|---|---|---|
Calculation | None | Energy Minization | Energy Minization | Hessian | |
Level of Theory | None | Semi-Empirical / SCF | DFT (B3LYP/6-31G*) | DFT (B3LYP/6-31G*) | |
Default Size Limit (Atoms) | 2000 | 500 | 50 | 40 | |
Content of MD Topology | |||||
Charges Derived From | None | MOPAC | Merz-Singh-Kollman | Merz-Singh-Kollman | |
Geometry | User Provided | Optimized | Optimized | Optimized | |
Non-Bonded Interactions | Bonds | Rule Based: Parameters are asigned from existing parameters with a set of rules based on atom types and geometry. | Hessian Based: Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists. | ||
Angles | |||||
Dihedrals |
Current Processing State | Completed |
Total Processing Time | 13:56:12 (hh:mm:ss) |
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