C8H18N2O | MD Topology | NMR | X-Ray

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Molecule Information
Molecule Typeamino acid
Residue Name (RNME)6PMF
FormulaC8H18N2O
IUPAC InChI Key
SEFFUZLOAWQCPY-ZETCQYMHSA-N
IUPAC InChI
InChI=1S/C8H18N2O/c1-7(9-2)5-4-6-8(11)10-3/h7,9H,4-6H2,1-3H3,(H,10,11)/t7-/m0/s1
IUPAC Name
Common Name
Canonical SMILES (Daylight)
CNC(=O)CCC[C@@H](NC)C
Number of atoms29
Net Charge0
Forcefieldmultiple
Molecule ID329636
Visibility Public
Molecule Tags

Format

Molecular Dynamics (MD) Files

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X-Ray - Docking Files

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NMR Parameters

1H NMR Spectrum

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Fragment-Based Charges

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Processing Information

QM Processing Stage

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Processing Stage Template Semi-Empirical QM (QM0) DFT QM (QM1) DFT Hessian QM (QM2)
Calculation None Energy Minization Energy Minization Hessian
Level of Theory None Semi-Empirical / SCF DFT (B3LYP/6-31G*) DFT (B3LYP/6-31G*)
Default Size Limit (Atoms) 2000 500 50 40
Content of MD Topology
Charges Derived From None MOPAC Merz-Singh-Kollman Merz-Singh-Kollman
Geometry  User Provided Optimized Optimized Optimized
Non-Bonded Interactions Bonds Rule Based:

Parameters are asigned from existing parameters with a set of rules based on atom types and geometry.

 Hessian Based:

Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists.
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Data

Current Processing StateCompleted
Total Processing Time13:29:45 (hh:mm:ss)

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