1,6-Dihydro-2-pyridinamine | C5H7N2 | MD Topology | NMR | X-Ray

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Molecule Information

Molecule Typeheteromolecule
Residue Name (RNME)L4ED
FormulaC5H7N2
IUPAC InChI Key
YSMRAFSHKXBOFO-UHFFFAOYSA-N
IUPAC InChI
InChI=1S/C5H8N2/c6-5-3-1-2-4-7-5/h2-4,7H,1,6H2
IUPAC Name
pyridin-1-ium-2-amine
Common Name1,6-Dihydro-2-pyridinamine
Canonical SMILES (Daylight)
Nc1cccc[nH+]1
Number of atoms14
Net Charge1
Forcefieldmultiple
Molecule ID330431
ChemSpider ID373398
Visibility Public
Molecule Tags

Format

Molecular Dynamics (MD) Files

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X-Ray - Docking Files

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NMR Parameters

1H NMR Spectrum

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Fragment-Based Charges

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Topology History

Processing Information

QM Processing Stage

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Processing Stage Template Semi-Empirical QM (QM0) DFT QM (QM1) DFT Hessian QM (QM2)
Calculation None Energy Minization Energy Minization Hessian
Level of Theory None Semi-Empirical / SCF DFT (B3LYP/6-31G*) DFT (B3LYP/6-31G*)
Default Size Limit (Atoms) 2000 500 50 40
Content of MD Topology
Charges Derived From None MOPAC Merz-Singh-Kollman Merz-Singh-Kollman
Geometry  User Provided Optimized Optimized Optimized
Non-Bonded Interactions Bonds Rule Based:

Parameters are asigned from existing parameters with a set of rules based on atom types and geometry.

Hessian Based:

Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists.

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Dihedrals

Data

Current Processing StateCompleted
Total Processing Time34 days, 22:59:59 (hh:mm:ss)

ATB Pipeline Setting

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Calculated Solvation Free Energy

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Solvation Free Energy Data

Status Completed
TI Solvent SPC water
Result -138.7 +/- 1.8 kJ.mol-1
Experimental Solvent None
Experimental Value NA +/- NA kJ.mol-1
ATB Version 2.2
Completion Date 2018-11-23

Solvation Free Energy Plot

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Calculated Solvation Free Energy

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