Molecule Type | lipid |
Residue Name (RNME) | 8XPG |
Formula | C48H82N4O11P |
IUPAC InChI Key | SDKMUALKCGJJBR-RJSVYUGRSA-N |
IUPAC InChI | InChI=1S/C48H84N4O11P/c1-5-7-9-11-13-15-17-19-21-23-25-27-29-60-34-39(61-30-28-26-24-22-20-18-16-14-12-10-8-6-2)35-62-64(58,59)63-36-43(54)45(55)42(53)33-52-41-32-38(4)37(3)31-40(41)49-44-46(52)50-48(57)51-47(44)56/h31-32,39,41-43,45,53-55H,5-30,33-36H2,1-4H3,(H,58,59)(H,51,56,57)/t39-,41?,42-,43-,45-/m0/s1 |
IUPAC Name | |
Common Name | |
Canonical SMILES (Daylight) | CCCCCCCCCCCCCCOC[C@@H](CO[P@](=[O-])(OC[C@@H]([C@H]([C@H](CN1[C@@H]2C=C(C)C(=CC2=[N]=C2C1=[N]=[C](=O)NC2=O)C)O)O)O)O)OCCCCCCCCCCCCCC |
Number of atoms | 146 |
Net Charge | -1 |
Forcefield | multiple |
Molecule ID | 363434 |
Visibility | Public |
Molecule Tags |
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Processing Stage | Template | Semi-Empirical QM (QM0) | DFT QM (QM1) | DFT Hessian QM (QM2) | |
---|---|---|---|---|---|
Calculation | None | Energy Minization | Energy Minization | Hessian | |
Level of Theory | None | Semi-Empirical / SCF | DFT (B3LYP/6-31G*) | DFT (B3LYP/6-31G*) | |
Default Size Limit (Atoms) | 2000 | 500 | 50 | 40 | |
Content of MD Topology | |||||
Charges Derived From | None | MOPAC | Merz-Singh-Kollman | Merz-Singh-Kollman | |
Geometry | User Provided | Optimized | Optimized | Optimized | |
Non-Bonded Interactions | Bonds | Rule Based: Parameters are asigned from existing parameters with a set of rules based on atom types and geometry. | Hessian Based: Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists. | ||
Angles | |||||
Dihedrals |
Current Processing State | Completed |
Total Processing Time | 0:34:10 (hh:mm:ss) |
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The maximum QM level is computed using the ATB Pipeline atom limits but can be manually increased on a case by case basis.
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