C13H21N5 | MD Topology | NMR | X-Ray

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Molecule Information

Molecule Typeheteromolecule
Residue Name (RNME)TZPI
FormulaC13H21N5
IUPAC InChI Key
DPWZPERPWLOFNC-UHFFFAOYSA-N
IUPAC InChI
InChI=1S/C13H21N5/c1-4-5-6-7-14-12-11-13(16-8-15-12)18(9-17-11)10(2)3/h8-10,14H,4-7H2,1-3H3
IUPAC Name
Common Name
Canonical SMILES (Daylight)
CCCCCNC1=[N]=[CH]=[N]=[C]2=[C]1=[N]=CN2C(C)C
Number of atoms39
Net Charge0
Forcefieldmultiple
Molecule ID524592
ChEMBL ID 99785
Visibility Public
Molecule Tags

Format

Molecular Dynamics (MD) Files

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X-Ray - Docking Files

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NMR Parameters

1H NMR Spectrum

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Fragment-Based Charges

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Topology History

Processing Information

QM Processing Stage

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Processing Stage Template Semi-Empirical QM (QM0) DFT QM (QM1) DFT Hessian QM (QM2)
Calculation None Energy Minization Energy Minization Hessian
Level of Theory None Semi-Empirical / SCF DFT (B3LYP/6-31G*) DFT (B3LYP/6-31G*)
Default Size Limit (Atoms) 2000 500 50 40
Content of MD Topology
Charges Derived From None MOPAC Merz-Singh-Kollman Merz-Singh-Kollman
Geometry  User Provided Optimized Optimized Optimized
Non-Bonded Interactions Bonds Rule Based:

Parameters are asigned from existing parameters with a set of rules based on atom types and geometry.

Hessian Based:

Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists.

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Data

Current Processing StateCompleted
Total Processing Time34 days, 22:59:59 (hh:mm:ss)

ATB Pipeline Setting

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Calculated Solvation Free Energy

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