Molecule Type | heteromolecule |
Residue Name (RNME) | 4PT |
Formula | C17H29O22P4 |
IUPAC InChI Key | JPQZDANYJXWKKH-XKUBOQIMSA-N |
IUPAC InChI | InChI=1S/C17H36O22P4/c1-3-5-10(18)33-7-9(35-11(19)6-4-2)8-34-43(31,32)39-14-12(20)15(36-40(22,23)24)17(38-42(28,29)30)16(13(14)21)37-41(25,26)27/h9,11-17,19-21H,3-8H2,1-2H3,(H,31,32)(H2,22,23,24)(H2,25,26,27)(H2,28,29,30)/t9-,11+,12+,13+,14-,15+,16-,17-/m1/s1 |
IUPAC Name | |
Common Name | |
Canonical SMILES (Daylight) | CCC[C@H](O[C@@H](CO[P@@](=[O-])(O[C@H]1[C@H](O)[C@@H](O[P@@](=[O-])(O)[O-])[C@@H]([C@H]([C@H]1O)OP(=O)([O-])[O-])O[P@@](=[O-])(O)[O-])O)COC(=O)CCC)O |
Number of atoms | 72 |
Net Charge | -7 |
Forcefield | multiple |
Molecule ID | 11705 |
PDB hetId | 4PT |
Visibility | Public |
Molecule Tags |
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Processing Stage | Template | Semi-Empirical QM (QM0) | DFT QM (QM1) | DFT Hessian QM (QM2) | |
---|---|---|---|---|---|
Calculation | None | Energy Minization | Energy Minization | Hessian | |
Level of Theory | None | Semi-Empirical / SCF | DFT (B3LYP/6-31G*) | DFT (B3LYP/6-31G*) | |
Default Size Limit (Atoms) | 2000 | 500 | 50 | 40 | |
Content of MD Topology | |||||
Charges Derived From | None | MOPAC | Merz-Singh-Kollman | Merz-Singh-Kollman | |
Geometry | User Provided | Optimized | Optimized | Optimized | |
Non-Bonded Interactions | Bonds | Rule Based: Parameters are asigned from existing parameters with a set of rules based on atom types and geometry. | Hessian Based: Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists. | ||
Angles | |||||
Dihedrals |
Current Processing State | Completed |
Total Processing Time | 13:17:51 (hh:mm:ss) |
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