Molecule Type | amino acid |
Residue Name (RNME) | 2GB9 |
Formula | C14H27N5O4 |
IUPAC InChI Key | OWYXUJKZOALCQE-GFCCVEGCSA-N |
IUPAC InChI | InChI=1S/C14H28N5O4/c1-19(2,3)10-11-9-18(17-16-11)7-4-8-23-13(20)6-5-12(15)14(21)22/h9,12,16-17H,4-8,10,15H2,1-3H3,(H,21,22)/t12-/m1/s1 |
IUPAC Name | |
Common Name | |
Canonical SMILES (Daylight) | O=C(CC[C@H](C(=O)O)N)OCCCN1NNC(=C1)C[N](C)(C)C |
Number of atoms | 50 |
Net Charge | 2 |
Forcefield | multiple |
Molecule ID | 29895 |
Visibility | Public |
Molecule Tags |
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Processing Stage | Template | Semi-Empirical QM (QM0) | DFT QM (QM1) | DFT Hessian QM (QM2) | |
---|---|---|---|---|---|
Calculation | None | Energy Minization | Energy Minization | Hessian | |
Level of Theory | None | Semi-Empirical / SCF | DFT (B3LYP/6-31G*) | DFT (B3LYP/6-31G*) | |
Default Size Limit (Atoms) | 2000 | 500 | 50 | 40 | |
Content of MD Topology | |||||
Charges Derived From | None | MOPAC | Merz-Singh-Kollman | Merz-Singh-Kollman | |
Geometry | User Provided | Optimized | Optimized | Optimized | |
Non-Bonded Interactions | Bonds | Rule Based: Parameters are asigned from existing parameters with a set of rules based on atom types and geometry. | Hessian Based: Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists. | ||
Angles | |||||
Dihedrals |
Current Processing State | Completed |
Total Processing Time | 0:11:10 (hh:mm:ss) |
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The maximum QM level is computed using the ATB Pipeline atom limits but can be manually increased on a case by case basis.
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