Molecule Type | amino acid |
Residue Name (RNME) | V9G0 |
Formula | C65H95N13O14 |
IUPAC InChI Key | VSNQEQDEZALZIA-YSWRSIKWSA-N |
IUPAC InChI | InChI=1S/C65H95N13O14/c79-53(40-14-1-27-66-40)67-28-2-15-41(67)54(80)68-29-3-16-42(68)55(81)69-30-4-17-43(69)56(82)70-31-5-18-44(70)57(83)71-32-6-19-45(71)58(84)72-33-7-20-46(72)59(85)73-34-8-21-47(73)60(86)74-35-9-22-48(74)61(87)75-36-10-23-49(75)62(88)76-37-11-24-50(76)63(89)77-38-12-25-51(77)64(90)78-39-13-26-52(78)65(91)92/h40-52,71H,1-39,66H2,(H,91,92)/t40-,41-,42-,43-,44-,45-,46-,47-,48-,49-,50-,51-,52-/m0/s1 |
IUPAC Name | |
Common Name | |
Canonical SMILES (Daylight) | OC(=O)[C@@H]1CCCN1C(=O)[C@@H]1CCCN1C(=O)[C@@H]1CCCN1C(=O)[C@@H]1CCCN1C(=O)[C@@H]1CCCN1C(=O)[C@@H]1CCCN1C(=O)[C@@H]1CCCN1C(=O)[C@@H]1CCC[NH]1C(=O)[C@@H]1CCCN1C(=O)[C@@H]1CCCN1C(=O)[C@@H]1CCCN1C(=O)[C@@H]1CCCN1C(=O)[C@@H]1CCC[NH2+]1 |
Number of atoms | 187 |
Net Charge | 2 |
Forcefield | multiple |
Molecule ID | 338937 |
Visibility | Public |
Molecule Tags |
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Processing Stage | Template | Semi-Empirical QM (QM0) | DFT QM (QM1) | DFT Hessian QM (QM2) | |
---|---|---|---|---|---|
Calculation | None | Energy Minization | Energy Minization | Hessian | |
Level of Theory | None | Semi-Empirical / SCF | DFT (B3LYP/6-31G*) | DFT (B3LYP/6-31G*) | |
Default Size Limit (Atoms) | 2000 | 500 | 50 | 40 | |
Content of MD Topology | |||||
Charges Derived From | None | MOPAC | Merz-Singh-Kollman | Merz-Singh-Kollman | |
Geometry | User Provided | Optimized | Optimized | Optimized | |
Non-Bonded Interactions | Bonds | Rule Based: Parameters are asigned from existing parameters with a set of rules based on atom types and geometry. | Hessian Based: Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists. | ||
Angles | |||||
Dihedrals |
Current Processing State | Completed |
Total Processing Time | 1:06:56 (hh:mm:ss) |
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