Molecule Type | heteromolecule |
Residue Name (RNME) | MGYV |
Formula | C70H119O56S7 |
IUPAC InChI Key | DEAXZCIARDMOIP-FWGYESKHSA-N |
IUPAC InChI | InChI=1S/C70H140O56S7/c71-29-36-53-43(75)46(78)64(113-36)124-57-37(30-72)114-67(50(82)60(57)109-18-4-11-25-130(94,95)96)120-54-40(33-106-15-1-8-22-127(85,86)87)117-65(47(79)44(54)76)125-58-38(31-73)115-68(51(83)61(58)110-19-5-12-26-131(97,98)99)121-55-41(34-107-16-2-9-23-128(88,89)90)118-66(48(80)45(55)77)126-59-39(32-74)116-69(52(84)62(59)111-20-6-13-27-132(100,101)102)122-56-42(35-108-17-3-10-24-129(91,92)93)119-70(123-53)63(49(56)81)112-21-7-14-28-133(103,104)105/h36-105H,1-35H2/t36-,37-,38-,39-,40-,41-,42-,43-,44-,45-,46-,47-,48-,49+,50-,51-,52-,53-,54-,55-,56-,57-,58-,59-,60-,61-,62-,63+,64+,65+,66+,67+,68+,69+,70+/m1/s1 |
IUPAC Name | |
Common Name | |
Canonical SMILES (Daylight) | OC[C@H]1O[C@H]2O[C@@H]3[C@@H](COCCCCS(O)(O)O)O[C@H]([C@@H]([C@H]3O)O)O[C@@H]3[C@@H](CO)O[C@H]([C@@H]([C@H]3OCCCCS(O)(O)O)O)O[C@@H]3[C@@H](COCCCCS(O)(O)O)O[C@H]([C@H]([C@H]3O)OCCCCS(O)(O)O)O[C@@H]3[C@H](O[C@@H](O[C@@H]4[C@H](O[C@@H](O[C@@H]5[C@H](O[C@@H](O[C@H]1[C@@H]([C@H]2O)OCCCCS(O)(O)O)[C@H](O)[C@H]5O)COCCCCS(O)(O)O)[C@H](O)[C@H]4OCCCCS(O)(O)O)CO)[C@H](O)[C@H]3O)CO |
Number of atoms | 252 |
Net Charge | -7 |
Forcefield | multiple |
Molecule ID | 365789 |
Visibility | Public |
Molecule Tags |
Generating ...
Generating ...
Generating ...
No charge assignments available. Use the button above to use OFraMP fragment-based charge assignment.
Click table to toggle details.
Processing Stage | Template | Semi-Empirical QM (QM0) | DFT QM (QM1) | DFT Hessian QM (QM2) | |
---|---|---|---|---|---|
Calculation | None | Energy Minization | Energy Minization | Hessian | |
Level of Theory | None | Semi-Empirical / SCF | DFT (B3LYP/6-31G*) | DFT (B3LYP/6-31G*) | |
Default Size Limit (Atoms) | 2000 | 500 | 50 | 40 | |
Content of MD Topology | |||||
Charges Derived From | None | MOPAC | Merz-Singh-Kollman | Merz-Singh-Kollman | |
Geometry | User Provided | Optimized | Optimized | Optimized | |
Non-Bonded Interactions | Bonds | Rule Based: Parameters are asigned from existing parameters with a set of rules based on atom types and geometry. | Hessian Based: Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists. | ||
Angles | |||||
Dihedrals |
Current Processing State | Completed |
Total Processing Time | 2:58:51 (hh:mm:ss) |
Access to this feature is currently restricted
The maximum QM level is computed using the ATB Pipeline atom limits but can be manually increased on a case by case basis.
Access to this feature is currently restricted