Molecule Type | heteromolecule |
Residue Name (RNME) | H5AF |
Formula | C89H171N3O39S |
IUPAC InChI Key | PWWNGRUXYATQHC-LRHLDDHXSA-N |
IUPAC InChI | InChI=1S/C89H171N3O39S/c1-5-8-10-12-84(92-89(97)85(11-9-6-2)91-83(4)93)88(96)90-14-82-132-81-13-87(95)131-80-78-129-76-74-127-72-70-125-68-66-123-64-62-121-60-58-119-56-54-117-52-50-115-48-46-113-44-42-111-40-38-109-36-34-107-32-30-105-28-26-103-24-22-101-20-18-99-16-15-98-17-19-100-21-23-102-25-27-104-29-31-106-33-35-108-37-39-110-41-43-112-45-47-114-49-51-116-53-55-118-57-59-120-61-63-122-65-67-124-69-71-126-73-75-128-77-79-130-86(94)7-3/h7,84-85H,3,5-6,8-82H2,1-2,4H3,(H,90,96)(H,91,93)(H,92,97)/t84-,85-/m0/s1 |
IUPAC Name | |
Common Name | |
Canonical SMILES (Daylight) | CCCCC[C@@H](C(=O)NCCSCCC(=O)OCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOC(=O)C=C)NC(=O)[C@@H](NC(=O)C)CCCC |
Number of atoms | 303 |
Net Charge | 0 |
Forcefield | multiple |
Molecule ID | 367065 |
Visibility | Public |
Molecule Tags |
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Processing Stage | Template | Semi-Empirical QM (QM0) | DFT QM (QM1) | DFT Hessian QM (QM2) | |
---|---|---|---|---|---|
Calculation | None | Energy Minization | Energy Minization | Hessian | |
Level of Theory | None | Semi-Empirical / SCF | DFT (B3LYP/6-31G*) | DFT (B3LYP/6-31G*) | |
Default Size Limit (Atoms) | 2000 | 500 | 50 | 40 | |
Content of MD Topology | |||||
Charges Derived From | None | MOPAC | Merz-Singh-Kollman | Merz-Singh-Kollman | |
Geometry | User Provided | Optimized | Optimized | Optimized | |
Non-Bonded Interactions | Bonds | Rule Based: Parameters are asigned from existing parameters with a set of rules based on atom types and geometry. | Hessian Based: Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists. | ||
Angles | |||||
Dihedrals |
Current Processing State | Completed |
Total Processing Time | 1:48:51 (hh:mm:ss) |
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