Molecule Type | heteromolecule |
Residue Name (RNME) | XPTZ |
Formula | C13H20O8 |
IUPAC InChI Key | NFAZJHRZECFIQY-BGZDPUMWSA-N |
IUPAC InChI | InChI=1S/C13H20O8/c1-6(10(14)15)3-8(12(18)19)5-9(13(20)21)4-7(2)11(16)17/h6-9H,3-5H2,1-2H3,(H,14,15)(H,16,17)(H,18,19)(H,20,21)/t6-,7-,8-,9+/m1/s1 |
IUPAC Name | |
Common Name | |
Canonical SMILES (Daylight) | C[C@@H](C(=O)O)C[C@H](C(=O)O)C[C@H](C(=O)O)C[C@H](C(=O)O)C |
Number of atoms | 41 |
Net Charge | 0 |
Forcefield | multiple |
Molecule ID | 367066 |
Visibility | Public |
Molecule Tags |
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Processing Stage | Template | Semi-Empirical QM (QM0) | DFT QM (QM1) | DFT Hessian QM (QM2) | |
---|---|---|---|---|---|
Calculation | None | Energy Minization | Energy Minization | Hessian | |
Level of Theory | None | Semi-Empirical / SCF | DFT (B3LYP/6-31G*) | DFT (B3LYP/6-31G*) | |
Default Size Limit (Atoms) | 2000 | 500 | 50 | 40 | |
Content of MD Topology | |||||
Charges Derived From | None | MOPAC | Merz-Singh-Kollman | Merz-Singh-Kollman | |
Geometry | User Provided | Optimized | Optimized | Optimized | |
Non-Bonded Interactions | Bonds | Rule Based: Parameters are asigned from existing parameters with a set of rules based on atom types and geometry. | Hessian Based: Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists. | ||
Angles | |||||
Dihedrals |
Current Processing State | Completed |
Total Processing Time | 15:28:20 (hh:mm:ss) |
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The maximum QM level is computed using the ATB Pipeline atom limits but can be manually increased on a case by case basis.
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