Molecule Type | lipid |
Residue Name (RNME) | 9UJR |
Formula | C39H77N2O6P |
IUPAC InChI Key | BCFFIQPBGMMECM-QQRIYSRRSA-N |
IUPAC InChI | InChI=1S/C39H78N2O6P/c1-6-8-10-12-14-16-18-19-20-21-23-25-27-29-31-33-39(43)40-37(36-47-48(44,45)46-35-34-41(3,4)5)38(42)32-30-28-26-24-22-17-15-13-11-9-7-2/h19-20,30,32,37-38,42H,6-18,21-29,31,33-36H2,1-5H3,(H,40,43)(H,44,45)/b20-19-,32-30+/t37-,38+/m0/s1 |
IUPAC Name | |
Common Name | |
Canonical SMILES (Daylight) | CCCCCCCCCCC/C=C/[C@H]([C@@H](NC(=O)CCCCCCC/C=C\CCCCCCCC)CO[P@@](=O)(OCC[N](C)(C)C)O)O |
Number of atoms | 125 |
Net Charge | 0 |
Forcefield | multiple |
Molecule ID | 458963 |
Visibility | Public |
Molecule Tags |
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Processing Stage | Template | Semi-Empirical QM (QM0) | DFT QM (QM1) | DFT Hessian QM (QM2) | |
---|---|---|---|---|---|
Calculation | None | Energy Minization | Energy Minization | Hessian | |
Level of Theory | None | Semi-Empirical / SCF | DFT (B3LYP/6-31G*) | DFT (B3LYP/6-31G*) | |
Default Size Limit (Atoms) | 2000 | 500 | 50 | 40 | |
Content of MD Topology | |||||
Charges Derived From | None | MOPAC | Merz-Singh-Kollman | Merz-Singh-Kollman | |
Geometry | User Provided | Optimized | Optimized | Optimized | |
Non-Bonded Interactions | Bonds | Rule Based: Parameters are asigned from existing parameters with a set of rules based on atom types and geometry. | Hessian Based: Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists. | ||
Angles | |||||
Dihedrals |
Current Processing State | Completed |
Total Processing Time | 0:21:46 (hh:mm:ss) |
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