Molecule Type | heteromolecule |
Residue Name (RNME) | YKAF |
Formula | C36H36N6O30P5S2 |
IUPAC InChI Key | JZEQRBZUENYLBK-YMFQHCGCSA-N |
IUPAC InChI | InChI=1S/C36H51N6O30P5S2/c37-22-9-7-19-26(20-8-10-23(38)32(79(62,63)64)30(20)68-29(19)31(22)78(59,60)61)18-6-5-17(15-21(18)35(46)47)33(45)40-12-3-1-2-4-14-65-73(49,50)69-75(53,54)71-77(57,58)72-76(55,56)70-74(51,52)66-16-24-27(43)28(44)34(67-24)42-13-11-25(39)41-36(42)48/h5-11,13,15,17-18,24,27-29,34,43-44,59-64H,1-4,12,14,16,37-39H2,(H,40,45)(H,46,47)(H,49,50)(H,51,52)(H,53,54)(H,55,56)(H,57,58)/t17?,18?,24-,27-,28-,29?,34-/m1/s1 |
IUPAC Name | |
Common Name | |
Canonical SMILES (Daylight) | Nc1c(S(O)(O)O)c2O[C@H]3C(=C(c2cc1)[C@@H]1C(=C[C@H](C=C1)C(=O)NCCCCCCO[P@](=O)(O)O[P@](=O)(O)O[P@@](=O)(O)O[P@@](=O)(O)O[P@](=O)(O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N1[C](=O)=[N]=C(N)C=C1)C(=O)O)C=CC(=C3S(O)(O)O)N |
Number of atoms | 115 |
Net Charge | -9 |
Forcefield | multiple |
Molecule ID | 514920 |
Visibility | Public |
Molecule Tags |
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Processing Stage | Template | Semi-Empirical QM (QM0) | DFT QM (QM1) | DFT Hessian QM (QM2) | |
---|---|---|---|---|---|
Calculation | None | Energy Minization | Energy Minization | Hessian | |
Level of Theory | None | Semi-Empirical / SCF | DFT (B3LYP/6-31G*) | DFT (B3LYP/6-31G*) | |
Default Size Limit (Atoms) | 2000 | 500 | 50 | 40 | |
Content of MD Topology | |||||
Charges Derived From | None | MOPAC | Merz-Singh-Kollman | Merz-Singh-Kollman | |
Geometry | User Provided | Optimized | Optimized | Optimized | |
Non-Bonded Interactions | Bonds | Rule Based: Parameters are asigned from existing parameters with a set of rules based on atom types and geometry. | Hessian Based: Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists. | ||
Angles | |||||
Dihedrals |
Current Processing State | Completed |
Total Processing Time | 10:42:05 (hh:mm:ss) |
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