MD Topology | NMR | X-Ray

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Processing Information

QM Processing Stage

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Processing Stage Template Semi-Empirical QM (QM0) DFT QM (QM1) DFT Hessian QM (QM2)
Calculation None Energy Minization Energy Minization Hessian
Level of Theory None Semi-Empirical / SCF DFT (B3LYP/6-31G*) DFT (B3LYP/6-31G*)
Default Size Limit (Atoms) 2000 500 50 40
Content of MD Topology
Charges Derived From None MOPAC Merz-Singh-Kollman Merz-Singh-Kollman
Geometry  User Provided Optimized Optimized Optimized
Non-Bonded Interactions Bonds Rule Based:

Parameters are asigned from existing parameters with a set of rules based on atom types and geometry.

Hessian Based:

Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists.

Angles
Dihedrals

Data

Current Processing StateCompleted
Total Processing TimeNA (hh:mm:ss)

Molecule Information

Molecule Typeheteromolecule
Residue Name (RNME)AON
FormulaNone
IUPAC InChI Key
None
IUPAC InChI
None
IUPAC Name
Common Name
Canonical SMILES (Daylight)
NULL
Number of atoms10
Net Charge0
Forcefieldmultiple
Molecule ID567
Visibility Public
Molecule Tags

Molecular Dynamics (MD) Files

Topology Information

Force Field Version53A5 (IFP53A5.dat)
Upload Date2009-09-25 21:16:51
Literature ReferenceLink

Affiliated Pre-Equilibrated Systems

Author Name Description Link
Oostenbrink, Villa, Mark and V ... 512 aceton Rectangular box; 512 molecules Link
Oostenbrink, Villa, Mark and V ... 512 acetone Rectangular box; 512 molecules Link

Topology History

Other conformers for this molecule (501-600 of 633)

The highlighted row is the currently viewed molecule with the following conditions:
Green: the current molecule has the lowest QM energy in the set.
Yellow: the current molecule is within 2 kJ.mol-1 of the minimum energy.
Red: the current molecule is above 2 kJ.mol-1 of the minimum energy.

Compare All Topologies (633)RMSD Matrix (633)

Molid  Formula  Iupac  Atoms  Charge  Curation  Δ Qm Optimized Energy
(kJ.mol-1) >
Compare 
17429 None - 15 0 Manual N/A Compare with
17430 None - 15 0 Manual N/A Compare with
17431 None - 15 0 Manual N/A Compare with
17432 None - 15 0 Manual N/A Compare with
17433 None - 21 -1 Manual N/A Compare with
17434 None - 21 -1 Manual N/A Compare with
17435 None - 21 -1 Manual N/A Compare with
17436 None - 21 -1 Manual N/A Compare with
17437 None - 25 0 Manual N/A Compare with
17438 None - 25 0 Manual N/A Compare with
17439 None - 25 0 Manual N/A Compare with
17440 None - 25 0 Manual N/A Compare with
17441 None - 28 1 Manual N/A Compare with
17442 None - 28 1 Manual N/A Compare with
17443 None - 28 1 Manual N/A Compare with
17444 None - 28 1 Manual N/A Compare with
17445 None - 28 0 Manual N/A Compare with
17446 None - 28 0 Manual N/A Compare with
17447 None - 28 0 Manual N/A Compare with
17448 None - 28 0 Manual N/A Compare with
17449 None - 23 0 Manual N/A Compare with
17450 None - 23 0 Manual N/A Compare with
17451 None - 23 0 Manual N/A Compare with
17452 None - 23 0 Manual N/A Compare with
17453 None - 28 0 Manual N/A Compare with
17454 None - 28 0 Manual N/A Compare with
17455 None - 28 0 Manual N/A Compare with
17456 None - 28 0 Manual N/A Compare with
17457 None - 28 0 Manual N/A Compare with
17458 None - 28 0 Manual N/A Compare with
17459 None - 28 0 Manual N/A Compare with
17460 None - 28 0 Manual N/A Compare with
17461 None - 22 0 Manual N/A Compare with
17462 None - 22 0 Manual N/A Compare with
17463 None - 22 0 Manual N/A Compare with
17464 None - 22 0 Manual N/A Compare with
17465 None - 31 0 Manual N/A Compare with
17466 None - 31 0 Manual N/A Compare with
17467 None - 31 0 Manual N/A Compare with
17468 None - 31 0 Manual N/A Compare with
17469 None - 24 0 Manual N/A Compare with
17470 None - 24 0 Manual N/A Compare with
17471 None - 24 0 Manual N/A Compare with
17472 None - 24 0 Manual N/A Compare with
17473 None - 23 0 Manual N/A Compare with
17474 None - 23 0 Manual N/A Compare with
17475 None - 23 0 Manual N/A Compare with
17476 None - 23 0 Manual N/A Compare with
17477 None - 27