Molecule Type | heteromolecule |
Residue Name (RNME) | UBFQ |
Formula | C71H129N2O21 |
IUPAC InChI Key | SCLNUBSATUVXEZ-FQNRTIIZSA-N |
IUPAC InChI | InChI=1S/C71H130N2O21/c1-4-6-8-10-12-14-16-18-20-22-24-25-27-29-31-33-35-37-39-41-43-45-58(81)73-52(53(78)44-42-40-38-36-34-32-30-28-26-23-21-19-17-15-13-11-9-7-5-2)50-89-68-63(85)62(84)65(57(49-76)91-68)92-69-64(86)67(61(83)56(48-75)90-69)94-71(70(87)88)46-54(79)59(72-51(3)77)66(93-71)60(82)55(80)47-74/h18,20,42,44,52-57,59-69,74-76,78-80,82-86H,4-17,19,21-41,43,45-50H2,1-3H3,(H,72,77)(H,73,81)(H,87,88)/b20-18-,44-42+/t52-,53+,54-,55+,56+,57+,59+,60+,61-,62+,63+,64+,65+,66+,67-,68+,69-,71-/m0/s1 |
IUPAC Name | |
Common Name | |
Canonical SMILES (Daylight) | CCCCCCCCCCCCCCCCCCC/C=C/[C@H]([C@@H](NC(=O)CCCCCCCCCCCCC/C=C\CCCCCCCC)CO[C@@H]1O[C@H](CO)[C@H]([C@@H]([C@H]1O)O)O[C@@H]1O[C@H](CO)[C@@H]([C@@H]([C@H]1O)O[C@@]1(C[C@H](O)[C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)C(=O)O)O)O |
Number of atoms | 223 |
Net Charge | -1 |
Forcefield | multiple |
Molecule ID | 598143 |
Visibility | Public |
Molecule Tags |
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Processing Stage | Template | Semi-Empirical QM (QM0) | DFT QM (QM1) | DFT Hessian QM (QM2) | |
---|---|---|---|---|---|
Calculation | None | Energy Minization | Energy Minization | Hessian | |
Level of Theory | None | Semi-Empirical / SCF | DFT (B3LYP/6-31G*) | DFT (B3LYP/6-31G*) | |
Default Size Limit (Atoms) | 2000 | 500 | 50 | 40 | |
Content of MD Topology | |||||
Charges Derived From | None | MOPAC | Merz-Singh-Kollman | Merz-Singh-Kollman | |
Geometry | User Provided | Optimized | Optimized | Optimized | |
Non-Bonded Interactions | Bonds | Rule Based: Parameters are asigned from existing parameters with a set of rules based on atom types and geometry. | Hessian Based: Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists. | ||
Angles | |||||
Dihedrals |
Current Processing State | Completed |
Total Processing Time | 1:43:10 (hh:mm:ss) |
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