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| Processing Stage | Template | Semi-Empirical QM (QM0) | DFT QM (QM1) | DFT Hessian QM (QM2) | |
|---|---|---|---|---|---|
| Calculation | None | Energy Minization | Energy Minization | Hessian | |
| Level of Theory | None | Semi-Empirical / SCF | DFT (B3LYP/6-31G*) | DFT (B3LYP/6-31G*) | |
| Default Size Limit (Atoms) | 2000 | 500 | 50 | 40 | |
| Content of MD Topology | |||||
| Charges Derived From | None | MOPAC | Merz-Singh-Kollman | Merz-Singh-Kollman | |
| Geometry | User Provided | Optimized | Optimized | Optimized | |
| Non-Bonded Interactions | Bonds | Rule Based: Parameters are asigned from existing parameters with a set of rules based on atom types and geometry. | Hessian Based: Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists. | ||
| Angles | |||||
| Dihedrals | |||||
| Current Processing State | Completed |
| Total Processing Time | NA (hh:mm:ss) |
| Molecule Type | lipid |
| Residue Name (RNME) | DOPC |
| Formula | None |
| IUPAC InChI Key | None |
| IUPAC InChI | None |
| IUPAC Name | |
| Common Name | |
| Canonical SMILES (Daylight) | NULL |
| Number of atoms | 138 |
| Net Charge | 0 |
| Forcefield | multiple |
| Molecule ID | 1507 |
| Visibility | Public |
| Molecule Tags |
| Force Field Version | 54A7 (IFP54A7.dat / 54A7.ifp) |
| Upload Date | 2010-07-08 12:09:36 |
| Literature Reference | Link |
| Author | Name | Description | Link |
|---|---|---|---|
| David Poger | DOPC bilayer | Hydrated 128-DOPC bilayer | Link |
| Zak Hughes | DOPC | Hydrated 128-DOPC bilayer | Link |
| Zak Hughes | DOPC bilayer | 128-DOPC bilayer in 2.5 mol. % ... | Link |
| Zak Hughes | DOPC bilayer | 128-DOPC bilayer in 5.0 mol. % ... | Link |
| Zak Hughes | DOPC bilayer | 128-DOPC bilayer in 10.0 mol. ... | Link |
| Zak Hughes | DOPC bilayer | 128-DOPC bilayer in 12.5 mol. ... | Link |
| Zak Hughes | DOPC bilayer | 128-DOPC bilayer in 15.0 mol. ... | Link |