C144H96 | MD Topology | NMR | X-Ray

Visualize with JSmol

Molecule Information

Molecule Typeheteromolecule
Residue Name (RNME)RMD7
FormulaC144H96
IUPAC InChI Key
USKPHLHQRILHPP-UYGYWXFMSA-N
IUPAC InChI
InChI=1S/C144H96/c1-2-98-4-3-97(1)99-5-7-101(8-6-99)103-13-15-105(16-14-103)107-21-23-109(24-22-107)111-29-31-113(32-30-111)115-37-39-117(40-38-115)119-45-47-121(48-46-119)123-53-55-125(56-54-123)127-61-63-129(64-62-127)131-69-71-133(72-70-131)135-77-79-137(80-78-135)139-85-87-141(88-86-139)143-93-95-144(96-94-143)142-91-89-140(90-92-142)138-83-81-136(82-84-138)134-75-73-132(74-76-134)130-67-65-128(66-68-130)126-59-57-124(58-60-126)122-51-49-120(50-52-122)118-43-41-116(42-44-118)114-35-33-112(34-36-114)110-27-25-108(26-28-110)106-19-17-104(18-20-106)102-11-9-100(98)10-12-102/h1-96H/b99-97-,100-98-,103-101-,104-102-,107-105-,108-106-,111-109-,112-110-,115-113-,116-114-,119-117-,120-118-,123-121-,124-122-,127-125-,128-126-,131-129-,132-130-,135-133-,136-134-,139-137-,140-138-,143-141-,144-142-
IUPAC Name
Common Name
Canonical SMILES (Daylight)
c1cc2ccc1c1ccc(cc1)c1ccc(cc1)c1ccc(cc1)c1ccc(cc1)c1ccc(cc1)c1ccc(cc1)c1ccc(cc1)c1ccc(cc1)c1ccc(cc1)c1ccc(cc1)c1ccc(cc1)c1ccc(c3ccc(c4ccc(c5ccc(c6ccc(c7ccc(c8ccc(c9ccc(c%10ccc(c%11ccc(c%12ccc(c%13ccc2cc%13)cc%12)cc%11)cc%10)cc9)cc8)cc7)cc6)cc5)cc4)cc3)cc1
Number of atoms240
Net Charge0
Forcefieldmultiple
Molecule ID1824525
Visibility Public
Molecule Tags

Format

Molecular Dynamics (MD) Files

Generating ...

X-Ray - Docking Files

Generating ...

NMR Parameters

1H NMR Spectrum

Generating ...

Fragment-Based Charges

No charge assignments available. Use the button above to use OFraMP fragment-based charge assignment.

Topology History

Processing Information

QM Processing Stage

Click table to toggle details.

Processing Stage Template Semi-Empirical QM (QM0) DFT QM (QM1) DFT Hessian QM (QM2)
Calculation None Energy Minization Energy Minization Hessian
Level of Theory None Semi-Empirical / SCF DFT (B3LYP/6-31G*) DFT (B3LYP/6-31G*)
Default Size Limit (Atoms) 2000 500 50 40
Content of MD Topology
Charges Derived From None MOPAC Merz-Singh-Kollman Merz-Singh-Kollman
Geometry  User Provided Optimized Optimized Optimized
Non-Bonded Interactions Bonds Rule Based:

Parameters are asigned from existing parameters with a set of rules based on atom types and geometry.

Hessian Based:

Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists.

Angles
Dihedrals

Data

Current Processing StateCompleted
Total Processing Time0:24:04 (hh:mm:ss)

Calculated Solvation Free Energy

Access to this feature is currently restricted

Submit New Solvation Free Energy Computation