Molecule Type | lipid |
Residue Name (RNME) | THDD |
Formula | C55H97O10 |
IUPAC InChI Key | IXKJPVGXFQSATB-WVTJSFLFSA-N |
IUPAC InChI | InChI=1S/C55H102O10/c56-51(57)41-31-21-8-3-1-2-7-18-28-38-49(39-29-19-11-14-24-34-44-54(62)63)50(40-30-20-12-15-25-35-45-55(64)65)47-46-48(37-27-17-10-13-23-33-43-53(60)61)36-26-16-6-4-5-9-22-32-42-52(58)59/h48-50H,1-47H2,(H,56,57)(H,58,59)(H,60,61)(H,62,63)(H,64,65)/t48-,49+,50+/m1/s1 |
IUPAC Name | |
Common Name | |
Canonical SMILES (Daylight) | [O-]C(=O)CCCCCCCC[C@H]([C@H](CCCCCCCCC(=O)[O-])CCCCCCCCCCCC(=O)[O-])CC[C@@H](CCCCCCCCC(=O)[O-])CCCCCCCCCCC(=O)[O-] |
Number of atoms | 162 |
Net Charge | -5 |
Forcefield | multiple |
Molecule ID | 23098 |
Visibility | Public |
Molecule Tags |
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Processing Stage | Template | Semi-Empirical QM (QM0) | DFT QM (QM1) | DFT Hessian QM (QM2) | |
---|---|---|---|---|---|
Calculation | None | Energy Minization | Energy Minization | Hessian | |
Level of Theory | None | Semi-Empirical / SCF | DFT (B3LYP/6-31G*) | DFT (B3LYP/6-31G*) | |
Default Size Limit (Atoms) | 2000 | 500 | 50 | 40 | |
Content of MD Topology | |||||
Charges Derived From | None | MOPAC | Merz-Singh-Kollman | Merz-Singh-Kollman | |
Geometry | User Provided | Optimized | Optimized | Optimized | |
Non-Bonded Interactions | Bonds | Rule Based: Parameters are asigned from existing parameters with a set of rules based on atom types and geometry. | Hessian Based: Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists. | ||
Angles | |||||
Dihedrals |
Current Processing State | Completed |
Total Processing Time | 0:19:18 (hh:mm:ss) |
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