C12H16N4O2S2 | MD Topology | NMR | X-Ray

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Molecule Information

Molecule Typeheteromolecule
Residue Name (RNME)G1T5
FormulaC12H16N4O2S2
IUPAC InChI Key
ASEBKJOYOQUDOR-ZKCHVHJHSA-N
IUPAC InChI
InChI=1S/C12H16N4O2S2/c1-3-13-9(17)7-8-15(11(13)19)5-6-16(8)12(20)14(4-2)10(7)18/h7-8H,3-6H2,1-2H3/t7-,8-
IUPAC Name
Common Name
Canonical SMILES (Daylight)
CCN1C(=O)[C@@H]2[C@H]3N(C1=S)CCN3C(=S)N(C2=O)CC
Number of atoms36
Net Charge0
Forcefieldmultiple
Molecule ID351150
ChEMBL ID 41713
Visibility Public
Molecule Tags

Format

Molecular Dynamics (MD) Files

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X-Ray - Docking Files

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NMR Parameters

1H NMR Spectrum

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Fragment-Based Charges

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Topology History

Processing Information

QM Processing Stage

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Processing Stage Template Semi-Empirical QM (QM0) DFT QM (QM1) DFT Hessian QM (QM2)
Calculation None Energy Minization Energy Minization Hessian
Level of Theory None Semi-Empirical / SCF DFT (B3LYP/6-31G*) DFT (B3LYP/6-31G*)
Default Size Limit (Atoms) 2000 500 50 40
Content of MD Topology
Charges Derived From None MOPAC Merz-Singh-Kollman Merz-Singh-Kollman
Geometry  User Provided Optimized Optimized Optimized
Non-Bonded Interactions Bonds Rule Based:

Parameters are asigned from existing parameters with a set of rules based on atom types and geometry.

Hessian Based:

Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists.

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Data

Current Processing StateCompleted
Total Processing Time1 day, 4:56:07 (hh:mm:ss)

ATB Pipeline Setting

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Calculated Solvation Free Energy

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