Molecule Type | lipid |
Residue Name (RNME) | QC4Y |
Formula | C51H87F3N5O11P |
IUPAC InChI Key | POEOMQWIPNXQJD-LILIGNOISA-N |
IUPAC InChI | InChI=1S/C51H89F3N5O11P/c1-5-7-9-11-13-15-17-19-21-23-25-27-32-67-38-41(68-33-28-26-24-22-20-18-16-14-12-10-8-6-2)39-70-71(65,66)69-34-31-59(3,4)37-45(61)47(62)44(60)36-58-43-30-29-40(51(52,53)54)35-42(43)55-46-48(58)56-50(64)57-49(46)63/h29-30,35,41,43-45,47,60-62H,5-28,31-34,36-39H2,1-4H3,(H,65,66)(H,57,63,64)/t41-,43?,44-,45-,47-/m0/s1 |
IUPAC Name | |
Common Name | |
Canonical SMILES (Daylight) | CCCCCCCCCCCCCCO[C@H](CO[P@](=[O-])(OCC[N+](C[C@@H]([C@H]([C@H](CN1[C@@H]2C=CC(=CC2=[N]=C2C1=[N]=[C](=O)NC2=O)C(F)(F)F)O)O)O)(C)C)O)COCCCCCCCCCCCCCC |
Number of atoms | 158 |
Net Charge | 0 |
Forcefield | multiple |
Molecule ID | 363316 |
Visibility | Public |
Molecule Tags |
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Processing Stage | Template | Semi-Empirical QM (QM0) | DFT QM (QM1) | DFT Hessian QM (QM2) | |
---|---|---|---|---|---|
Calculation | None | Energy Minization | Energy Minization | Hessian | |
Level of Theory | None | Semi-Empirical / SCF | DFT (B3LYP/6-31G*) | DFT (B3LYP/6-31G*) | |
Default Size Limit (Atoms) | 2000 | 500 | 50 | 40 | |
Content of MD Topology | |||||
Charges Derived From | None | MOPAC | Merz-Singh-Kollman | Merz-Singh-Kollman | |
Geometry | User Provided | Optimized | Optimized | Optimized | |
Non-Bonded Interactions | Bonds | Rule Based: Parameters are asigned from existing parameters with a set of rules based on atom types and geometry. | Hessian Based: Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists. | ||
Angles | |||||
Dihedrals |
Current Processing State | Completed |
Total Processing Time | 0:24:05 (hh:mm:ss) |
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The maximum QM level is computed using the ATB Pipeline atom limits but can be manually increased on a case by case basis.
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