Molecule Type | heteromolecule |
Residue Name (RNME) | AJG8 |
Formula | C63H108N5O45 |
IUPAC InChI Key | PIRKQKQOAPATRO-UPTJFPGTSA-N |
IUPAC InChI | InChI=1S/C63H113N5O45/c1-3-5-7-94-17-32(75)12-64-44-51(89)55(35(101-59(44)93)20-97-25-40(79)80)106-111-61-46(65-9-29(72)14-69)53(91)57(37(103-61)22-99-27-42(83)84)108-113-63-48(67-11-31(74)16-71)54(92)58(38(105-63)23-100-28-43(85)86)109-112-62-47(66-10-30(73)15-70)52(90)56(36(104-62)21-98-26-41(81)82)107-110-60-45(68-13-33(76)18-95-8-6-4-2)50(88)49(87)34(102-60)19-96-24-39(77)78/h29-38,44-76,87-93H,3-28H2,1-2H3,(H,77,78)(H,79,80)(H,81,82)(H,83,84)(H,85,86)/t29-,30-,31-,32-,33-,34+,35+,36+,37+,38+,44+,45+,46+,47+,48+,49+,50+,51+,52+,53+,54+,55+,56+,57+,58+,59+,60-,61-,62-,63-/m0/s1 |
IUPAC Name | |
Common Name | |
Canonical SMILES (Daylight) | CCCCOC[C@H](CN[C@H]1[C@H](O)O[C@@H]([C@H]([C@@H]1O)OO[C@@H]1O[C@H](COCC(=O)O)[C@H]([C@@H]([C@H]1NC[C@@H](CO)O)O)OO[C@@H]1O[C@H](COCC(=O)O)[C@H]([C@@H]([C@H]1NC[C@@H](CO)O)O)OO[C@@H]1O[C@H](COCC(=O)O)[C@H]([C@@H]([C@H]1NC[C@@H](CO)O)O)OO[C@@H]1O[C@H](COCC(=O)O)[C@H]([C@@H]([C@H]1NC[C@@H](COCCCC)O)O)O)COCC(=O)O)O |
Number of atoms | 221 |
Net Charge | -5 |
Forcefield | multiple |
Molecule ID | 613251 |
Visibility | Public |
Molecule Tags |
Generating ...
Generating ...
Generating ...
No charge assignments available. Use the button above to use OFraMP fragment-based charge assignment.
Click table to toggle details.
Processing Stage | Template | Semi-Empirical QM (QM0) | DFT QM (QM1) | DFT Hessian QM (QM2) | |
---|---|---|---|---|---|
Calculation | None | Energy Minization | Energy Minization | Hessian | |
Level of Theory | None | Semi-Empirical / SCF | DFT (B3LYP/6-31G*) | DFT (B3LYP/6-31G*) | |
Default Size Limit (Atoms) | 2000 | 500 | 50 | 40 | |
Content of MD Topology | |||||
Charges Derived From | None | MOPAC | Merz-Singh-Kollman | Merz-Singh-Kollman | |
Geometry | User Provided | Optimized | Optimized | Optimized | |
Non-Bonded Interactions | Bonds | Rule Based: Parameters are asigned from existing parameters with a set of rules based on atom types and geometry. | Hessian Based: Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists. | ||
Angles | |||||
Dihedrals |
Current Processing State | Completed |
Total Processing Time | 3:15:08 (hh:mm:ss) |
Access to this feature is currently restricted
The maximum QM level is computed using the ATB Pipeline atom limits but can be manually increased on a case by case basis.
Access to this feature is currently restricted