N-Methylmorpholine | C5H11NO | MD Topology | NMR | X-Ray

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Molecule Information

Molecule Typeheteromolecule
Residue Name (RNME)G276
FormulaC5H11NO
IUPAC InChI Key
SJRJJKPEHAURKC-UHFFFAOYSA-N
IUPAC InChI
InChI=1S/C5H11NO/c1-6-2-4-7-5-3-6/h2-5H2,1H3
IUPAC Name
4-Methylmorpholine
Common NameN-Methylmorpholine
Canonical SMILES (Daylight)
CN1CCOCC1
Number of atoms18
Net Charge0
Forcefieldmultiple
Molecule ID1044
ChemSpider ID7684
ChEMBL ID 2448839
Visibility Public
Molecule Tags amine III ATB3.0 validation Boulanger et al. Dodda et al. ether Gerber Marenich et al. Mobley et al. Shivakumar et al.

Format

Molecular Dynamics (MD) Files

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X-Ray - Docking Files

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NMR Parameters

1H NMR Spectrum

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Fragment-Based Charges

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Topology History

Processing Information

QM Processing Stage

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Processing Stage Template Semi-Empirical QM (QM0) DFT QM (QM1) DFT Hessian QM (QM2)
Calculation None Energy Minization Energy Minization Hessian
Level of Theory None Semi-Empirical / SCF DFT (B3LYP/6-31G*) DFT (B3LYP/6-31G*)
Default Size Limit (Atoms) 2000 500 50 40
Content of MD Topology
Charges Derived From None MOPAC Merz-Singh-Kollman Merz-Singh-Kollman
Geometry  User Provided Optimized Optimized Optimized
Non-Bonded Interactions Bonds Rule Based:

Parameters are asigned from existing parameters with a set of rules based on atom types and geometry.

Hessian Based:

Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists.

Angles
Dihedrals

Data

Current Processing StateCompleted
Total Processing Time3:07:06 (hh:mm:ss)

Calculated Solvation Free Energy

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Solvation Free Energy Data

Status Completed
TI Solvent SPC water
Result -29.4 +/- 1.0 kJ.mol-1
Experimental Solvent water
Experimental Value -26.5 +/- NA kJ.mol-1
ATB Version 3.0
Completion Date 2018-10-12

Solvation Free Energy Plot

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Calculated Solvation Free Energy

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