C17H16N2O5 | MD Topology | NMR | X-Ray

Visualize with JSmol

Show Structure

Molecule Information
Molecule Typeheteromolecule
Residue Name (RNME)6FRH
FormulaC17H16N2O5
IUPAC InChI Key
ZUWIMNKDRAQUJH-MRXNPFEDSA-N
IUPAC InChI
InChI=1S/C17H17N2O5/c1-12(20)18-16(11-13-5-3-2-4-6-13)24-17(21)14-7-9-15(10-8-14)19(22)23/h2-10,16H,11H2,1H3,(H,18,20)(H,22,23)/t16-/m1/s1
IUPAC Name
Common Name
Canonical SMILES (Daylight)
O=C(c1ccc(cc1)[N+](=O)[O-])O[C@H](Cc1ccccc1)NC(=O)C
Number of atoms40
Net Charge0
Forcefieldmultiple
Molecule ID1164112
ChEMBL ID 43179
Visibility Public
Molecule Tags

Format

Molecular Dynamics (MD) Files

Generating ...

X-Ray - Docking Files

Generating ...

NMR Parameters

1H NMR Spectrum

Generating ...

Fragment-Based Charges

No charge assignments available. Use the button above to use OFraMP fragment-based charge assignment.

Topology History

Processing Information

QM Processing Stage

Click table to toggle details.

Processing Stage Template Semi-Empirical QM (QM0) DFT QM (QM1) DFT Hessian QM (QM2)
Calculation None Energy Minization Energy Minization Hessian
Level of Theory None Semi-Empirical / SCF DFT (B3LYP/6-31G*) DFT (B3LYP/6-31G*)
Default Size Limit (Atoms) 2000 500 50 40
Content of MD Topology
Charges Derived From None MOPAC Merz-Singh-Kollman Merz-Singh-Kollman
Geometry  User Provided Optimized Optimized Optimized
Non-Bonded Interactions Bonds Rule Based:

Parameters are asigned from existing parameters with a set of rules based on atom types and geometry.

 Hessian Based:

Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists.
Angles
Dihedrals

Data

Current Processing StateCompleted
Total Processing Time5:17:59 (hh:mm:ss)

ATB Pipeline Setting

Calculated Solvation Free Energy

Access to this feature is currently restricted

Submit New Solvation Free Energy Computation

Conditions of Use