C9H17N3O4 | MD Topology | NMR | X-Ray

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Molecule Information

Molecule Typeheteromolecule
Residue Name (RNME)5W13
FormulaC9H17N3O4
IUPAC InChI Key
MTCUHGQMYVSIQC-FSPLSTOPSA-N
IUPAC InChI
InChI=1S/C9H17N3O4/c1-5(8(15)10-3)11-9(16)7(4-13)12-6(2)14/h5,7,13H,4H2,1-3H3,(H,10,15)(H,11,16)(H,12,14)/t5-,7-/m0/s1
IUPAC Name
Common Name
Canonical SMILES (Daylight)
OC[C@@H](C(=O)N[C@H](C(=O)NC)C)NC(=O)C
Number of atoms33
Net Charge0
Forcefieldmultiple
Molecule ID1191544
Visibility Public
Molecule Tags

Format

Molecular Dynamics (MD) Files

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X-Ray - Docking Files

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NMR Parameters

1H NMR Spectrum

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Fragment-Based Charges

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Topology History

Processing Information

QM Processing Stage

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Processing Stage Template Semi-Empirical QM (QM0) DFT QM (QM1) DFT Hessian QM (QM2)
Calculation None Energy Minization Energy Minization Hessian
Level of Theory None Semi-Empirical / SCF DFT (B3LYP/6-31G*) DFT (B3LYP/6-31G*)
Default Size Limit (Atoms) 2000 500 50 40
Content of MD Topology
Charges Derived From None MOPAC Merz-Singh-Kollman Merz-Singh-Kollman
Geometry  User Provided Optimized Optimized Optimized
Non-Bonded Interactions Bonds Rule Based:

Parameters are asigned from existing parameters with a set of rules based on atom types and geometry.

Hessian Based:

Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists.

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Data

Current Processing StateCompleted
Total Processing Time5:22:08 (hh:mm:ss)

Calculated Solvation Free Energy

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