C18H16N2O4S | MD Topology | NMR | X-Ray

Visualize with JSmol

Show Structure

Molecule Information
Molecule Typeheteromolecule
Residue Name (RNME)09B1
FormulaC18H16N2O4S
IUPAC InChI Key
SOPXNWYSUBFUJG-UHFFFAOYSA-N
IUPAC InChI
InChI=1S/C18H16N2O4S/c1-22-18(23-2)14-9-10-19-16(20-14)12-5-7-13(8-6-12)24-17(21)15-4-3-11-25-15/h3-11,18H,1-2H3
IUPAC Name
[4-[4-(dimethoxymethyl)pyrimidin-2-yl]phenyl] thiophene-2-carboxylate
Common Name
Canonical SMILES (Daylight)
COC([C]1=CC=[N]=[C](=[N]=1)c1ccc(cc1)OC(=O)c1cccs1)OC
Number of atoms41
Net Charge0
Forcefieldmultiple
Molecule ID1257671
ChEMBL ID 1447316
Visibility Public
Molecule Tags

Format

Molecular Dynamics (MD) Files

Generating ...

X-Ray - Docking Files

Generating ...

NMR Parameters

1H NMR Spectrum

Generating ...

Fragment-Based Charges

No charge assignments available. Use the button above to use OFraMP fragment-based charge assignment.

Topology History

Processing Information

QM Processing Stage

Click table to toggle details.

Processing Stage Template Semi-Empirical QM (QM0) DFT QM (QM1) DFT Hessian QM (QM2)
Calculation None Energy Minization Energy Minization Hessian
Level of Theory None Semi-Empirical / SCF DFT (B3LYP/6-31G*) DFT (B3LYP/6-31G*)
Default Size Limit (Atoms) 2000 500 50 40
Content of MD Topology
Charges Derived From None MOPAC Merz-Singh-Kollman Merz-Singh-Kollman
Geometry  User Provided Optimized Optimized Optimized
Non-Bonded Interactions Bonds Rule Based:

Parameters are asigned from existing parameters with a set of rules based on atom types and geometry.

 Hessian Based:

Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists.
Angles
Dihedrals

Data

Current Processing StateCompleted
Total Processing Time3:16:27 (hh:mm:ss)

ATB Pipeline Setting

Calculated Solvation Free Energy

Access to this feature is currently restricted

Submit New Solvation Free Energy Computation

Conditions of Use