C12H23N3O4 | MD Topology | NMR | X-Ray

Visualize with JSmol

Show Structure

Molecule Information
Molecule Typeheteromolecule
Residue Name (RNME)YBPS
FormulaC12H23N3O4
IUPAC InChI Key
GQIUCCDEQLPHIX-SNVBAGLBSA-N
IUPAC InChI
InChI=1S/C12H23N3O4/c1-4-5-6-10(8-15(19)9-16)12(18)13-7-11(17)14(2)3/h9-10,19H,4-8H2,1-3H3,(H,13,18)/t10-/m1/s1
IUPAC Name
Common Name
Canonical SMILES (Daylight)
CCCC[C@@H](C(=O)NCC(=O)N(C)C)CN(C=O)O
Number of atoms42
Net Charge0
Forcefieldmultiple
Molecule ID1402200
ChEMBL ID 329404
Visibility Public
Molecule Tags

Format

Molecular Dynamics (MD) Files

Generating ...

X-Ray - Docking Files

Generating ...

NMR Parameters

1H NMR Spectrum

Generating ...

Fragment-Based Charges

No charge assignments available. Use the button above to use OFraMP fragment-based charge assignment.

Topology History

Processing Information

QM Processing Stage

Click table to toggle details.

Processing Stage Template Semi-Empirical QM (QM0) DFT QM (QM1) DFT Hessian QM (QM2)
Calculation None Energy Minization Energy Minization Hessian
Level of Theory None Semi-Empirical / SCF DFT (B3LYP/6-31G*) DFT (B3LYP/6-31G*)
Default Size Limit (Atoms) 2000 500 50 40
Content of MD Topology
Charges Derived From None MOPAC Merz-Singh-Kollman Merz-Singh-Kollman
Geometry  User Provided Optimized Optimized Optimized
Non-Bonded Interactions Bonds Rule Based:

Parameters are asigned from existing parameters with a set of rules based on atom types and geometry.

 Hessian Based:

Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists.
Angles
Dihedrals

Data

Current Processing StateCompleted
Total Processing Time1:54:58 (hh:mm:ss)

ATB Pipeline Setting

Calculated Solvation Free Energy

Access to this feature is currently restricted

Submit New Solvation Free Energy Computation

Conditions of Use