| Molecule Type | lipid |
| Residue Name (RNME) | _UFV |
| Formula | C44H80NO8P |
| IUPAC InChI Key | BBVNFTVUMNUTDX-KWFLKNEZSA-N |
| IUPAC InChI | InChI=1S/C44H81NO8P/c1-6-8-10-12-14-16-18-20-22-24-26-28-30-32-34-36-43(46)50-40-42(41-52-54(48,49)51-39-38-45(3,4)5)53-44(47)37-35-33-31-29-27-25-23-21-19-17-15-13-11-9-7-2/h14-17,20-23,42H,6-13,18-19,24-41H2,1-5H3,(H,48,49)/b16-14-,17-15-,22-20-,23-21-/t42-/m0/s1 |
| IUPAC Name | 2-[[(2S)-2,3-bis[[(9Z,12Z)-octadeca-9,12-dienoyl]oxy]propoxy]-hydroxyphosphoryl]oxyethyl-trimethylazanium |
| Common Name | |
| Canonical SMILES (Daylight) | CCCCC/C=C\C/C=C\CCCCCCCC(=O)OC[C@H](OC(=O)CCCCCCC/C=C\C/C=C\CCCCC)CO[P@](=O)(OCC[N+](C)(C)C)O |
| Number of atoms | 134 |
| Net Charge | 0 |
| Forcefield | multiple |
| Molecule ID | 16123 |
| Visibility | Public |
| Molecule Tags |
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| Processing Stage | Template | Semi-Empirical QM (QM0) | DFT QM (QM1) | DFT Hessian QM (QM2) | |
|---|---|---|---|---|---|
| Calculation | None | Energy Minization | Energy Minization | Hessian | |
| Level of Theory | None | Semi-Empirical / SCF | DFT (B3LYP/6-31G*) | DFT (B3LYP/6-31G*) | |
| Default Size Limit (Atoms) | 2000 | 500 | 50 | 40 | |
| Content of MD Topology | |||||
| Charges Derived From | None | MOPAC | Merz-Singh-Kollman | Merz-Singh-Kollman | |
| Geometry | User Provided | Optimized | Optimized | Optimized | |
| Non-Bonded Interactions | Bonds | Rule Based: Parameters are asigned from existing parameters with a set of rules based on atom types and geometry. | Hessian Based: Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists. | ||
| Angles | |||||
| Dihedrals | |||||
| Current Processing State | Completed |
| Total Processing Time | 3:45:25 (hh:mm:ss) |
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