Molecule Type | heteromolecule |
Residue Name (RNME) | ACUC |
Formula | C44H84NO8P |
IUPAC InChI Key | MWJBWPDYNFAJFV-NVKMUCNASA-N |
IUPAC InChI | InChI=1S/C44H85NO8P/c1-6-8-10-12-14-16-18-20-22-24-26-28-30-32-34-36-43(46)50-40-42(41-52-54(48,49)51-39-38-45(3,4)5)53-44(47)37-35-33-31-29-27-25-23-21-19-17-15-13-11-9-7-2/h20-23,42H,6-19,24-41H2,1-5H3,(H,48,49)/b22-20-,23-21-/t42-/m1/s1 |
IUPAC Name | |
Common Name | 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE |
Canonical SMILES (Daylight) | CCCCCCCC/C=C\CCCCCCCC(=O)OC[C@@H](OC(=O)CCCCCCC/C=C\CCCCCCCC)CO[P@](=O)(OCC[N](C)(C)C)O |
Number of atoms | 138 |
Net Charge | 0 |
Forcefield | multiple |
Molecule ID | 1633464 |
ChemSpider ID | 8525772 |
PDB hetId | PCW |
Visibility | Public |
Molecule Tags |
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Processing Stage | Template | Semi-Empirical QM (QM0) | DFT QM (QM1) | DFT Hessian QM (QM2) | |
---|---|---|---|---|---|
Calculation | None | Energy Minization | Energy Minization | Hessian | |
Level of Theory | None | Semi-Empirical / SCF | DFT (B3LYP/6-31G*) | DFT (B3LYP/6-31G*) | |
Default Size Limit (Atoms) | 2000 | 500 | 50 | 40 | |
Content of MD Topology | |||||
Charges Derived From | None | MOPAC | Merz-Singh-Kollman | Merz-Singh-Kollman | |
Geometry | User Provided | Optimized | Optimized | Optimized | |
Non-Bonded Interactions | Bonds | Rule Based: Parameters are asigned from existing parameters with a set of rules based on atom types and geometry. | Hessian Based: Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists. | ||
Angles | |||||
Dihedrals |
Current Processing State | Completed |
Total Processing Time | 0:08:16 (hh:mm:ss) |
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