C816 | MD Topology | NMR | X-Ray

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Processing Information

QM Processing Stage

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Processing Stage Template Semi-Empirical QM (QM0) DFT QM (QM1) DFT Hessian QM (QM2)
Calculation None Energy Minization Energy Minization Hessian
Level of Theory None Semi-Empirical / SCF DFT (B3LYP/6-31G*) DFT (B3LYP/6-31G*)
Default Size Limit (Atoms) 2000 500 50 40
Content of MD Topology
Charges Derived From None MOPAC Merz-Singh-Kollman Merz-Singh-Kollman
Geometry  User Provided Optimized Optimized Optimized
Non-Bonded Interactions Bonds Rule Based:

Parameters are asigned from existing parameters with a set of rules based on atom types and geometry.

Hessian Based:

Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists.

Angles
Dihedrals

Data

Current Processing StateTemplate
Total Processing TimeNA (hh:mm:ss)

Molecule Information

Molecule Typeheteromolecule
Residue Name (RNME)PHCN
FormulaC816
IUPAC InChI Key
BHGSBRKCYXSLCW-UHFFFAOYSA-N
IUPAC InChI
None
IUPAC Name
Common Name
Canonical SMILES (Daylight)
c1cc2c3ccc4c5c3c3c6c2c2c1c1ccc7c8c1c1c2c2c6c6c9c3c3c5c5c%10c4ccc4c%10c%10c%11c5c5c3c3c9c9c%12c6c6c2c2c1c1c8c8c%13c7ccc7c%13c%13c%14c8c8c1c1c2c2c6c6c%12c%12c%15c9c9c3c3c5c5c%11c%11c%16c%10c%10c4ccc4c%10c%10c%16c%16c%17c%11c%11c5c5c3c3c9c9c%15c%15c%18c%12c%12c6c6c2c2c1c1c8c8c%14c%14c%19c%13c%13c7ccc7c%13c%13c%19c%19c%20c%14c%14c8c8c1c1c2c2c6c6c%12c%12c%18c%18c%21c%15c%15c9c9c3c3c5c5c%11c%11c%17c%17c%22c%16c%16c%10c%10c4ccc4c%10c%10c%16c%16c%22c%22c%23c%17c%17c%11c%11c5c5c3c3c9c9c%15c%15c%21c%21c%24c%18c%18c%12c%12c6c6c2c2c1c1c8c8c%14c%14c%20c%20c%25c%19c%19c%13c%13c7ccc7c%13c%13c%19c%19c%25c%25c%26c%20c%20c%14c%14c8c8c1c1c2c2c6c6c%12c%12c%18c%18c%24c%24c%27c%21c%21c%15c%15c9c9c3c3c5c5c%11c%11c%17c%17c%23c%23c%28c%22c%22c%16c%16c%10c%10c4ccc4c%10c%10c%16c%16c%22c%22c%28c%28c%29c%23c%23c%17c%17c%11c%11c5c5c3c3c9c9c%15c%15c%21c%21c%27c%27c%30c%24c%24c%18c%18c%12c%12c6c6c2c2c1c1c8c8c%14c%14c%20c%20c%26c%26c%31c%25c%25c%19c%19c%13c%13c7ccc7c%13c%13c%19c%19c%25c%25c%31c%31c%32c%26c%26c%20c%20c%14c%14c8c8c1c1c2c2c6c6c%12c%12c%18c%18c%24c%24c%30c%30c%33c%27c%27c%21c%21c%15c%15c9c9c3c3c5c5c%11c%11c%17c%17c%23c%23c%29c%29c%34c%28c%28c%22c%22c%16c%16c%10c%10c4ccc7c%10c%13c%16c%19c%22c%25c%28c%31c%34c4c%32c7c%26c%10c%20c%13c%14c%14c8c8c1c1c2c2c6c6c%12c%12c%18c%16c%24c%18c%30c%19c%20c%33c%22c%27c%24c%21c%21c%15c%15c9c9c3c3c5c5c%11c%11c%17c%17c%23c%23c%29c4c4c7c7c%10c%10c%13c%13c%14c%14c8c8c1c1c2c2c6c6c%12c%12c%16c%16c%18c%18c%19c%19c%25c%20c%20c%22c%22c%24c%24c%21c%21c%15c%15c9c9c3c3c5c5c%11c%11c%17c%17c%23c4c4c7c7c%10c%10c%13c%13c%14c%14c8c8c1c1c2c2c6c6c%12c%12c%16c%16c%18c%18c%19c%19c%23c%25c%25c%20c%20c%22c%22c%24c%24c%21c%21c%15c%15c9c9c3c3c5c5c%11c%11c%17c4c4c7c7c%10c%10c%13c%13c%14c%14c8c8c1c1c2c2c6c6c%12c%12c%16c%16c%18c%17c%19c%18c%19c%23c%23c%25c%25c%20c%20c%22c%22c%24c%24c%21c%21c%15c%15c9c9c3c3c5c5c%11c4c4c7c7c%10c%10c%13c%11c%14c%13c8c8c1c1c2c2c6c6c%12c%12c%16c%14c%17c%16c%18c%17c%18c%19c%19c%23c%23c%25c%25c%20c%20c%22c%22c%24c%24c%21c%21c%15c%15c9c9c3c3c5c4c4c7c5c%10c7c%11c%10c%13c%11c8c8c1c1c2c2c6c6c%12c%12c%14c%13c%16c%14c%17ccc%18c%16c%19c%17c%23c%18c%25c%19c%20c%20c%22c%22c%24c%23c%21c%21c%15c%15c9c9c3c4c3c5c4c7c5c%10c7c%11c%10c8c8c1c1c2c2c6c6c%12c(c%13cc%14)ccc6c6c2c2c1c1c8c8c%10c%10c7c7c5c5c4c4c3c9c3c%15c9c%21c%11c%23c%12c%22c%13c%20c%14c%19c%15c%18c(c%17cc%16)ccc%15c%15c%14c%14c%13c%13c%12c%12c%11c%11c9c9c3c4c3c5c4c7c5c%10c7c8c8c1c(c2cc6)ccc8c1c7c2c5c5c4c4c3c9c3c%11c6c%12c7c%13c(c%14cc%15)ccc7c7c6c6c3c4c3c5c(c2cc1)ccc3c6cc7
Number of atoms816
Net Charge0
Forcefieldmultiple
Molecule ID1937157
Visibility Public
Molecule Tags

Format

Molecular Dynamics (MD) Files

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X-Ray - Docking Files

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NMR Parameters

1H NMR Spectrum

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Fragment-Based Charges

No charge assignments available. Use the button above to use OFraMP fragment-based charge assignment.

Topology History