C208H348N22O81 | MD Topology | NMR | X-Ray

Visualize with JSmol

Molecule Information

Molecule Typeheteromolecule
Residue Name (RNME)_K0N
FormulaC208H348N22O81
IUPAC InChI Key
NAHAGNVLPJXUDS-UHFFFAOYSA-N
IUPAC InChI
InChI=1S/C208H348N22O81/c231-163(73-49-25-1-3-27-51-75-165(233)211-143-189(259)292-121-99-280-101-123-294-191(261)145-213-167(235)77-53-29-5-7-31-55-79-169(237)215-147-193(263)296-125-103-282-105-127-298-195(265)149-217-171(239)81-57-33-9-11-35-59-83-173(241)219-151-197(267)300-129-107-284-109-131-302-199(269)153-221-175(243)85-61-37-13-15-39-63-87-177(245)223-155-201(271)304-133-111-286-113-135-306-203(273)157-225-179(247)89-65-41-17-19-43-67-91-181(249)227-159-205(275)308-137-115-288-117-139-310-207(277)161-229-183(251)93-69-45-21-23-47-71-95-185(253)254)209-141-187(257)290-119-97-279-98-120-291-188(258)142-210-164(232)74-50-26-2-4-28-52-76-166(234)212-144-190(260)293-122-100-281-102-124-295-192(262)146-214-168(236)78-54-30-6-8-32-56-80-170(238)216-148-194(264)297-126-104-283-106-128-299-196(266)150-218-172(240)82-58-34-10-12-36-60-84-174(242)220-152-198(268)301-130-108-285-110-132-303-200(270)154-222-176(244)86-62-38-14-16-40-64-88-178(246)224-156-202(272)305-134-112-287-114-136-307
IUPAC Name
Common Name
Canonical SMILES (Daylight)
O=C(CNC(=O)CCCCCCCCC(=O)NCC(=O)OCCOCCOC(=O)CNC(=O)CCCCCCCCC(=O)NCC(=O)OCCOCCOC(=O)CNC(=O)CCCCCCCCC(=O)NCC(=O)OCCOCCOC(=O)CNC(=O)CCCCCCCCC(=O)NCC(=O)OCCOCCOC(=O)CNC(=O)CCCCCCCCC(=O)NCC(=O)OCCOCCOC(=O)CNC(=O)CCCCCCCCC(=O)O)OCCOCCOC(=O)CNC(=O)CCCCCCCCC(=O)NCC(=O)OCCOCCOC(=O)CNC(=O)CCCCCCCCC(=O)NCC(=O)OCCOCCOC(=O)CNC(=O)CCCCCCCCC(=O)NCC(=O)OCCOCCOC(=O)CNC(=O)CCCCCCCCC(=O)NCC(=O)OCCOCCOC(=O)CNC(=O)CCCCCCCCC(=O)NCC(=O)OCCOCCOC(=O)CNC(=O)CCCCCCCCC(=O)O
Number of atoms659
Net Charge0
Forcefieldmultiple
Molecule ID2615
Visibility Public
Molecule Tags

Format

Molecular Dynamics (MD) Files

Generating ...

X-Ray - Docking Files

Generating ...

NMR Parameters

1H NMR Spectrum

Generating ...

Fragment-Based Charges

No charge assignments available. Use the button above to use OFraMP fragment-based charge assignment.

Topology History

Processing Information

QM Processing Stage

Click table to toggle details.

Processing Stage Template Semi-Empirical QM (QM0) DFT QM (QM1) DFT Hessian QM (QM2)
Calculation None Energy Minization Energy Minization Hessian
Level of Theory None Semi-Empirical / SCF DFT (B3LYP/6-31G*) DFT (B3LYP/6-31G*)
Default Size Limit (Atoms) 2000 500 50 40
Content of MD Topology
Charges Derived From None MOPAC Merz-Singh-Kollman Merz-Singh-Kollman
Geometry  User Provided Optimized Optimized Optimized
Non-Bonded Interactions Bonds Rule Based:

Parameters are asigned from existing parameters with a set of rules based on atom types and geometry.

Hessian Based:

Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists.

Angles
Dihedrals

Data

Current Processing StateCompleted
Total Processing Time19:41:27 (hh:mm:ss)

Calculated Solvation Free Energy

Access to this feature is currently restricted

Submit New Solvation Free Energy Computation