Molecule Type | heteromolecule |
Residue Name (RNME) | JY80 |
Formula | C26H52N9O9S4 |
IUPAC InChI Key | NDPMOEXMGNCCFU-WJSCBVJRSA-N |
IUPAC InChI | InChI=1S/C26H52N9O9S4/c1-12(2)8-16(24(41)42)32-22(39)17(33-20(37)13(3)27)9-45-47-11-48(47)46-10-18(23(40)35-19(14(4)36)25(43)44)34-21(38)15(28)6-5-7-31-26(29)30/h12-19,31,36H,5-11,29-30H2,1-4,27-28H3,(H,32,39)(H,33,37)(H,34,38)(H,35,40)(H,41,42)(H,43,44)/t13-,14-,15-,16-,17+,18+,19-/m1/s1 |
IUPAC Name | |
Common Name | |
Canonical SMILES (Daylight) | C[C@@H](O)[C@H](C(=O)O)NC(=O)[C@@H](NC(=O)[C@@H](CCCNC(=[NH2])N)[NH3])CS[S@]1C[S@@]1SC[C@H](NC(=O)[C@H]([NH3])C)C(=O)N[C@@H](C(=O)O)CC(C)C |
Number of atoms | 100 |
Net Charge | 3 |
Forcefield | multiple |
Molecule ID | 307165 |
Visibility | Public |
Molecule Tags |
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Processing Stage | Template | Semi-Empirical QM (QM0) | DFT QM (QM1) | DFT Hessian QM (QM2) | |
---|---|---|---|---|---|
Calculation | None | Energy Minization | Energy Minization | Hessian | |
Level of Theory | None | Semi-Empirical / SCF | DFT (B3LYP/6-31G*) | DFT (B3LYP/6-31G*) | |
Default Size Limit (Atoms) | 2000 | 500 | 50 | 40 | |
Content of MD Topology | |||||
Charges Derived From | None | MOPAC | Merz-Singh-Kollman | Merz-Singh-Kollman | |
Geometry | User Provided | Optimized | Optimized | Optimized | |
Non-Bonded Interactions | Bonds | Rule Based: Parameters are asigned from existing parameters with a set of rules based on atom types and geometry. | Hessian Based: Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists. | ||
Angles | |||||
Dihedrals |
Current Processing State | Completed |
Total Processing Time | 0:12:52 (hh:mm:ss) |
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