Piperidine | C5H11N | MD Topology | NMR | X-Ray

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Molecule Information

Molecule Typeheteromolecule
Residue Name (RNME)G206
FormulaC5H11N
IUPAC InChI Key
NQRYJNQNLNOLGT-UHFFFAOYSA-N
IUPAC InChI
InChI=1S/C5H11N/c1-2-4-6-5-3-1/h6H,1-5H2
IUPAC Name
Piperidine
Common NamePiperidine
Canonical SMILES (Daylight)
C1CCCNC1
Number of atoms17
Net Charge0
Forcefieldmultiple
Molecule ID981
ChemSpider ID7791
ChEMBL ID 15487
Visibility Public
Molecule Tags amine II ATB3.0 validation Boulanger et al. Gerber Marenich et al. Mobley et al. SAMPL4 Shivakumar et al.

Format

Molecular Dynamics (MD) Files

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X-Ray - Docking Files

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NMR Parameters

1H NMR Spectrum

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Fragment-Based Charges

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Topology History

Processing Information

QM Processing Stage

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Processing Stage Template Semi-Empirical QM (QM0) DFT QM (QM1) DFT Hessian QM (QM2)
Calculation None Energy Minization Energy Minization Hessian
Level of Theory None Semi-Empirical / SCF DFT (B3LYP/6-31G*) DFT (B3LYP/6-31G*)
Default Size Limit (Atoms) 2000 500 50 40
Content of MD Topology
Charges Derived From None MOPAC Merz-Singh-Kollman Merz-Singh-Kollman
Geometry  User Provided Optimized Optimized Optimized
Non-Bonded Interactions Bonds Rule Based:

Parameters are asigned from existing parameters with a set of rules based on atom types and geometry.

Hessian Based:

Force constant are calculated from the QM potential. New parameters are created when no suitable parameters exists.

Angles
Dihedrals

Data

Current Processing StateCompleted
Total Processing Time2:13:29 (hh:mm:ss)

Calculated Solvation Free Energy

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